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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.171 | ||||||||
Common Name | AMTR_s00025p00151950, LOC18440675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 31042.1 Da PI: 6.9448 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.2 | 2.1e-34 | 30 | 84 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG+ekAtPk+++++m+vkgLtl+h+kSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00025.171 30 KPRLRWTAELHQRFVDAVTQLGGPEKATPKSVMRIMDVKGLTLYHLKSHLQKYRL 84 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.513 | 27 | 87 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-33 | 28 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 30 | 85 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.5E-17 | 30 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-8 | 32 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-25 | 136 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDSEANGSFR QIDGQDSSDS SRLILSADPK PRLRWTAELH QRFVDAVTQL GGPEKATPKS 60 VMRIMDVKGL TLYHLKSHLQ KYRLGKQTQR EAVINSNGRD VSLEEVTTVS DSSICLGSEN 120 RPTDTCSPTM VTDTLQISEA LRLQIEVQKS LHEQLEVQRH LQMRIEAQGK YLQSILEKAR 180 ETLARHHMGS AGIEETRREL SELSAKVSDG CRNPATFSLI GHQGLTGSQA KCEVLERLKK 240 KPMAPVLDLN SNLEPSNEDF GSGGCRKKEF DLNGFELGL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006850876.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X2 | ||||
Swissprot | Q9SAK5 | 4e-56 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | W1PQZ0 | 0.0 | W1PQZ0_AMBTC; Uncharacterized protein | ||||
STRING | PP1S25_131V6.1 | 2e-66 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 3e-71 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.171 |
Entrez Gene | 18440675 |
Publications ? help Back to Top | |||
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